{
  "slug": "io-github-cytoscape-cytoscape-desktop-mcp-bridge",
  "name": "io.github.cytoscape/cytoscape-desktop-mcp-bridge",
  "title": "Cytoscape Desktop MCP",
  "description": "Drive a running Cytoscape Desktop to load, lay out, and style biological networks.",
  "version": "1.0.3",
  "publishedAt": "2026-08-11T20:08:17.855626Z",
  "updatedAt": "2026-08-11T20:08:17.855626Z",
  "repoUrl": "https://github.com/cytoscape/cytoscape-desktop-mcp",
  "websiteUrl": "https://github.com/cytoscape/cytoscape-desktop-mcp",
  "namespace": {
    "type": "github",
    "owner": "cytoscape"
  },
  "kind": "local",
  "packages": [
    {
      "registryType": "mcpb",
      "identifier": "https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb",
      "version": null,
      "transport": "stdio",
      "runtimeHint": null
    },
    {
      "registryType": "npm",
      "identifier": "@cytoscape/cytoscape-desktop-mcp-bridge",
      "version": "1.0.3",
      "transport": "stdio",
      "runtimeHint": null
    }
  ],
  "remotes": [],
  "envVars": [
    {
      "name": "CYREST_PORT",
      "isSecret": false,
      "isRequired": false,
      "description": "Port Cytoscape Desktop's REST interface listens on (Edit > Preferences > REST API)"
    }
  ],
  "category": "other",
  "subcategory": "more",
  "company": "",
  "categoryAuto": true,
  "checks": [
    {
      "id": "source-linked",
      "label": "Source repository linked",
      "result": "pass",
      "detail": "https://github.com/cytoscape/cytoscape-desktop-mcp"
    },
    {
      "id": "version-pinned",
      "label": "Version pinned",
      "result": "warn",
      "detail": "Not pinned: https://github.com/cytoscape/cytoscape-desktop-mcp/releases/download/mcpb-v1.0.3/cytoscape-mcp.mcpb"
    },
    {
      "id": "secrets-requested",
      "label": "Secrets requested",
      "result": "info",
      "detail": "Asks for no secrets"
    },
    {
      "id": "known-registry",
      "label": "Known package registry",
      "result": "pass",
      "detail": "All packages come from npm, PyPI, OCI, NuGet or MCPB"
    },
    {
      "id": "namespace",
      "label": "Namespace ownership",
      "result": "info",
      "detail": "Name verified via GitHub account cytoscape"
    },
    {
      "id": "meta-text",
      "label": "Registry text aimed at the AI",
      "result": "pass",
      "detail": "Description and settings contain no hidden characters or instructions to the AI"
    },
    {
      "id": "code-flags",
      "label": "Code red flags",
      "result": "pass",
      "detail": "Read 2 files in the bundle: no obfuscation, encoded execution, credential reads or data-collection endpoints found"
    },
    {
      "id": "ai-text",
      "label": "Text aimed at the AI",
      "result": "pass",
      "detail": "No hidden characters or instructions to the AI in 2 files, including comments and the README"
    }
  ],
  "scannedAt": "2026-10-29",
  "level": "Scanned",
  "install": [
    {
      "label": "Claude Desktop (npm)",
      "kind": "claude_desktop_json",
      "text": "{\n  \"mcpServers\": {\n    \"cytoscape-desktop-mcp-bridge\": {\n      \"command\": \"npx\",\n      \"args\": [\n        \"-y\",\n        \"@cytoscape/cytoscape-desktop-mcp-bridge@1.0.3\"\n      ]\n    }\n  }\n}"
    }
  ],
  "curated": true,
  "stars": 8,
  "archived": false,
  "pushedAt": "2026-09-01T16:11:17Z",
  "health": {
    "score": 51,
    "parts": {
      "popularity": 0.2588460520399556,
      "activity": 0.6823357184274013,
      "issues": null,
      "security": 0.8
    },
    "fail": 0,
    "warn": 1,
    "raw": {
      "stars": 8,
      "forks": 4,
      "downloads": 36,
      "hn": null,
      "issuesOpen": 2,
      "issuesClosed": 3,
      "prsMerged": 15,
      "commits90": 7,
      "release": "2026-09-01T16:11:17Z",
      "pushed": "2026-09-01T16:11:17Z",
      "growth": null,
      "growthDays": null,
      "archived": false
    },
    "at": "2026-10-31T07:42:38.200Z"
  }
}