{
  "slug": "io-github-rachadele-biolit",
  "name": "io.github.rachadele/biolit",
  "title": "biolit",
  "description": "LLM-assisted biomedical literature screening and extraction for PubMed, GEO, and preprints.",
  "version": "0.1.25",
  "publishedAt": "2026-04-01T19:05:07.949986Z",
  "updatedAt": "2026-04-01T19:05:07.949986Z",
  "repoUrl": "https://github.com/rachadele/biolit",
  "websiteUrl": null,
  "namespace": {
    "type": "github",
    "owner": "rachadele"
  },
  "kind": "local",
  "packages": [
    {
      "registryType": "pypi",
      "identifier": "biolit",
      "version": "0.1.25",
      "transport": "stdio",
      "runtimeHint": null
    }
  ],
  "remotes": [],
  "envVars": [
    {
      "name": "ANTHROPIC_API_KEY",
      "isSecret": true,
      "isRequired": false,
      "description": "Anthropic API key (required when using the default Anthropic provider)"
    },
    {
      "name": "OPENAI_API_KEY",
      "isSecret": true,
      "isRequired": false,
      "description": "OpenAI API key (required when using LLM_PROVIDER=openai)"
    },
    {
      "name": "LLM_PROVIDER",
      "isSecret": false,
      "isRequired": false,
      "description": "LLM provider: anthropic (default), openai, or ollama"
    },
    {
      "name": "LLM_MODEL",
      "isSecret": false,
      "isRequired": false,
      "description": "Model name override (e.g. claude-sonnet-4-6, gpt-4o)"
    },
    {
      "name": "SEMANTIC_SCHOLAR_API_KEY",
      "isSecret": true,
      "isRequired": false,
      "description": "Semantic Scholar API key for higher rate limits on citation lookup (optional)"
    },
    {
      "name": "UNPAYWALL_EMAIL",
      "isSecret": false,
      "isRequired": false,
      "description": "Email address for Unpaywall API access to improve PDF retrieval (optional)"
    }
  ],
  "category": "health",
  "subcategory": "science",
  "company": "",
  "categoryAuto": true,
  "checks": [
    {
      "id": "source-linked",
      "label": "Source repository linked",
      "result": "pass",
      "detail": "https://github.com/rachadele/biolit"
    },
    {
      "id": "version-pinned",
      "label": "Version pinned",
      "result": "pass",
      "detail": "Every package has an explicit version"
    },
    {
      "id": "secrets-requested",
      "label": "Secrets requested",
      "result": "warn",
      "detail": "Asks for 3 secrets: ANTHROPIC_API_KEY, OPENAI_API_KEY, SEMANTIC_SCHOLAR_API_KEY"
    },
    {
      "id": "known-registry",
      "label": "Known package registry",
      "result": "pass",
      "detail": "All packages come from npm, PyPI, OCI, NuGet or MCPB"
    },
    {
      "id": "namespace",
      "label": "Namespace ownership",
      "result": "info",
      "detail": "Name verified via GitHub account rachadele"
    },
    {
      "id": "meta-text",
      "label": "Registry text aimed at the AI",
      "result": "pass",
      "detail": "Description and settings contain no hidden characters or instructions to the AI"
    },
    {
      "id": "install-scripts",
      "label": "Install scripts",
      "result": "pass",
      "detail": "biolit 0.1.25 has no setup.py; nothing runs at install"
    },
    {
      "id": "code-flags",
      "label": "Code red flags",
      "result": "pass",
      "detail": "Read 42 files in biolit 0.1.25: no obfuscation, encoded execution, credential reads or data-collection endpoints found"
    },
    {
      "id": "ai-text",
      "label": "Text aimed at the AI",
      "result": "pass",
      "detail": "No hidden characters or instructions to the AI in 42 files, including comments and the README"
    }
  ],
  "scannedAt": "2026-10-29",
  "level": "Scanned",
  "install": [
    {
      "label": "Claude Desktop (pypi)",
      "kind": "claude_desktop_json",
      "text": "{\n  \"mcpServers\": {\n    \"biolit\": {\n      \"command\": \"uvx\",\n      \"args\": [\n        \"biolit==0.1.25\"\n      ]\n    }\n  }\n}"
    }
  ],
  "curated": true,
  "stars": 2,
  "archived": false,
  "pushedAt": "2026-09-23T02:27:53Z",
  "health": {
    "score": 53,
    "parts": {
      "popularity": 0.2251817061610903,
      "activity": 0.8286868297942047,
      "issues": null,
      "security": 0.8
    },
    "fail": 0,
    "warn": 1,
    "raw": {
      "stars": 2,
      "forks": 0,
      "downloads": 62,
      "hn": null,
      "issuesOpen": 1,
      "issuesClosed": 0,
      "prsMerged": 32,
      "commits90": 35,
      "release": null,
      "pushed": "2026-09-23T02:27:53Z",
      "growth": null,
      "growthDays": null,
      "archived": false
    },
    "at": "2026-10-31T07:42:38.200Z"
  }
}